I think the main problem would be for the graph view. Then it sorts and organizes them, adding the results to the bottom of each note or to a special metadata field. In DEVONthink I do this with an applescript that searches for occurrences of the title (and the aliases) of each note in the other notes. It all depends on the developers, actually. So, to make them completely useful you have to add square brackets amnually, which I find a bit laborious Would those unbracketed links be shown in the backlinks? In TiddlyWiki, Freelinks marks words as links without the use of square brackets, and those links, although clickable and therefore usable, do not show up as backlinks.
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